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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015909773.1_cds_XP_016459892.1_53371
CDS Infomation

[gene=LOC107783440] [db_xref=GeneID:107783440] [protein=putative DUF21 domain-containing protein At3g13070, chloroplastic isoform X1] [protein_id=XP_016459892.1] [location=join(85915..86478,94232..94332,94430..94523,94875..94952,95055..95158,96807..96888,98535..98674,98761..98839,98952..99015,99455..99546,99629..99694,99994..100110,100321..100500,102647..102901)] [gbkey=CDS]
Sequence

ATGGATGCAGCAGTCCACCAAGTCTCACTCTTTAATCCGTCCTCATTCATCACCACCACC
TCTTCTAATAAACGTTCATATCCGCGCATTTATACTCGTCAATTAAAATTACCCATTAAA
CACTCCGCCCATAACAACCTCCGTTACTGTTGTGGGGTTGCTTCAAATTTTAACCTTTAT
CAAAATTCCAGGTGTAATTTTAATTCTAGGATTTGTCTGTCAATTAAAGGAAATGGGGTT
TTTCAGAATGCCCAAGATTCTTCTGGGCCATGCTTAAAAATACGATTTTTTGAGTTGTTG
AAAAAAGGGTTGGTTTTGGCTGCTGTGATATGTGGGGTTGTTGTAATTGGGTGCAGAAGA
GTGCTTGCTGTTGAAGGGGTTTTAAATGGGGGATATAATGGGGTTATAGAGCAGAGTTTG
GTTCTGTTGAGGGGTTCTTGGCCTACATTTTTGCAGGTTCTCAGGGTTTTTAAAGAGCAA
GGGTTAGTTCTTGCAGCGCTTCTTAGTCTTTCAGCTTTTTTCTCAATGGCTGAGACTTCA
ATCACTACTCTTTGGCCTTGGAAGGTACGGGAGTTGGCTGAAAAAGAATCTGACAGTGAG
GGGGTCTTCAAAATGTTGAGGAGTGATGTTACTCGATTCCTTACAACTATACTCATTGGA
ACAACCGTTGTCAATATTGGAGCTACAGCATTAGTTACTGAGGCTGCAACTGCAGTATTT
GGTGAAGCTGGTGTGAGTGCGGCAACTGGAGTTATGACGGTTTTAATCCTACTCCTAACG
GAAATTACTCCAAAAAGCATAGCTGTTCACAATGCTACGGAGGTTGCTAGGTTTGTGGTT
AGGCCAGTGGCATGGCTTTCCTTGATACTATATCCAGTAGGAAGAGTTGTGACATATCTA
TCAATGGGAATGCTAAAACTCCTCGGCTTGAAAGGAAGAAGTGAACCATATGTCACTGAA
GATGAATTGAAGTTGATGCTGCGAGGGGCAGAGTTAAGCGGCGCAATTGAGGAGGAAGAG
CAGGATATGATTGAAAACGTGTTGGAGATAAAAGATACCCATGTCAGAGAGGTAATGACA
CCTCTTGTTGATGTAGTTGCAATCGATGCCAGTGCAACTTTAGTTGATTTCCATAGTTTT
TGGGTGACACATCAGTACTCCAGGGTGCCTGTTTTTGAGCAACGTATAGATAATATTGTT
GGCATTGCATATGCCATGGATCTCCTAGATTATGTACAAAAGGGAGACTTGCTGGAAAGT
TCTGTCGTGGGAGACATGGCTCATAAACCTGCATACTTTGTTCCTGATTCTATGTCTGTG
TGGAACCTTCTAAGAGAGTTCCGCATTAGAAAGGTACACATGGCCGTTGTTCTAAATGAA
TATGGAGGAACTATTGGAATTGTAACCCTTGAAGATGTGGTCGAGGAAATTGTTGGTGAA
ATCTTTGACGAAAATGATTCAAAAGAGGAAATCCAGAAAAAAACTGGCTATATTGTCATG
CGGGCTGAGGGAATATACGATGTTGATGCAAACACTTCTATTGACCAGCTCTCTGAAGAT
CTCAATATTAAAATGCCTGAGGACCATCAGTATGAGACAGTCTCTGGCTTTGTCTGCGAA
GCATTTGGATATATCCCAAGGACAGGTGAGAGGATTAAGGTTATACTGGAAAGGGGAAAT
GAAGATGAGGACAACAATTATAATGACACAGAATCTGATCGAGCAGACCAAACTGAGAAG
AACCAAATGTTTAAGCTTGAGATATTAGCAGGGAATGCCAGAAAGGTCAGTGCTGTTCGA
TTTGAACGGATCAACCATGACGATGAAGAAACAGAGACCAATGAGGTAACACGCCTCATT
CCCAAAATTATGACTAGGAAGCGGAAAAATAATGGAGGCTCAGATAGAAGCAATCACAAC
GAGATCTCTTTTATGGAGAGGAGAGAAGAGGATGACCACTCCAACAATTTTGTTATGGCC
GAACATGAGGACAATCATGATACTGCTAATAAATAA

Peptide Sequence

PEP ID

XP_016459892.1
PEP Infomation

PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic isoform X1 [Nicotiana tabacum]
Sequence

MDAAVHQVSLFNPSSFITTTSSNKRSYPRIYTRQLKLPIKHSAHNNLRYCCGVASNFNLY
QNSRCNFNSRICLSIKGNGVFQNAQDSSGPCLKIRFFELLKKGLVLAAVICGVVVIGCRR
VLAVEGVLNGGYNGVIEQSLVLLRGSWPTFLQVLRVFKEQGLVLAALLSLSAFFSMAETS
ITTLWPWKVRELAEKESDSEGVFKMLRSDVTRFLTTILIGTTVVNIGATALVTEAATAVF
GEAGVSAATGVMTVLILLLTEITPKSIAVHNATEVARFVVRPVAWLSLILYPVGRVVTYL
SMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMT
PLVDVVAIDASATLVDFHSFWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDYVQKGDLLES
SVVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTIGIVTLEDVVEEIVGE
IFDENDSKEEIQKKTGYIVMRAEGIYDVDANTSIDQLSEDLNIKMPEDHQYETVSGFVCE
AFGYIPRTGERIKVILERGNEDEDNNYNDTESDRADQTEKNQMFKLEILAGNARKVSAVR
FERINHDDEETETNEVTRLIPKIMTRKRKNNGGSDRSNHNEISFMERREEDDHSNNFVMA
EHEDNHDTANK

Transcript Sequence

Gene sequence data has not been registered.